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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015828634.1_cds_XP_016503461.1_17004
CDS Infomation

[gene=LOC107821548] [db_xref=GeneID:107821548] [protein=LOW QUALITY PROTEIN: 5-epi-aristolochene synthase-like] [exception=unclassified translation discrepancy] [protein_id=XP_016503461.1] [location=join(63061..63118,63121..63170,63298..63562,63650..64025,64102..64320,64452..64590,64746..64991,65105..65334,65438..65504)] [gbkey=CDS]
Sequence

ATGGCCTCAGCAGCAGTAGCCAACTATGAAGAAGACATTGTTCGCCCCGTCGCCGACTTC
CCTAGTCTCTGGGGTGATCAGTTCCTTTCATTCTCCATTGATAATCAAGTTGCGGAAAAG
TATATATATGCTCAAGAGATTGAAGCATTGAAGGAACAAACGAGGAGTATGCTGTTAGCA
ACCGGAAGGAAATTGGCCGATACATTGAATTTGATTGACATTATTGAACGCCTTGGTATA
TCCTACCACTTTGAGAAAGAAATTGATGAGATTTTGGATCAGATTTACAACCAAAACTCA
AACTGCAATGATTTGTGCACCTCTGCACTTCAATTTCGATTGCTCAGGCAACACGGTTTC
AACATCTCTCCTGAAATTTTCAGCAAATTCCAAGATGAAAATGGCAAATTCAAGGAGTCT
CTTGCTAGTGATGTCTTAGGATTATTAAACTTGTATGAAGCTTCACATGTAAGGACTCAT
GCTGACGATATCTTAGAAGACGCACTTGCTTTCTCCACTATCCATCTTGAATCTGCAGCT
CCACATTTGAAATCTCCACTTAGGGAGCAAGTGACACATGCCCTTGAGCAATGTTTGCAC
AAGGGTGTTCCTAGAGTCGAGACCCGATTCTTCATCTCATCAATCTATGACAAGGAACAA
TCGAAGAATAATGTGTTACTTCGATTTGCCAAATTGGATTTCAACTTGCTCCAGATGTTG
CACAAACAAGAACTTGCTCAAGTATCAAGGTGGTGGAAAGATTTGGATTTTGTAACAACA
CTTCCATATGCTAGAGATCGAGTAGTTGAATGCTACTTTTGGGCATTAGGAGTTTATTTT
GAGCCTCAATACTCTCAAGCTCGCGTCATGCTCGTTAAGACCATATCAATGATTTCGATT
GTCGATGACACCTTTGATGCTTACGGTACAGTTAAAGAACTTGAGGCATACACAGATGCC
ATACAAAGATGGGATATCAACGAAATTGATCGGCTTCCTGATTACATGAAAATCAGTTAT
AAAGCTATTCTAGATCTCTACAAGGATTATGAAAAGGAATTGTCTAGTGCCGGAAGATCT
CATATTGTCTGCCATGCAATAGAAAGAATGAAAGAAGTAGTAAGAAATTATAATGTCGAG
TCAACATGGTTTATTGAAGGATATATGCCACCTGTTTCTGAATACCTAAGCAATGCACTA
GCAACTACCACATATTACTACCTCGCGACAACATCGTATTTGGGCATGAAGTCTGCCACG
GAGCAAGATTTTGAGTGGTTGTCAAAGAATCCAAAAATTCTTGAAGCTAGTGTAATTATA
TGTCGAGTTATCGATGACACAGCCACGTACGAGGTTGAGAAAAGCAGGGGACAAATTGCA
ACTGGAATTGAGTGCTGCATGAGAGATTATGGTATATCAACAAAAGAGGCAATGGCTAAA
TTTCAAAATATGGCTGAGACAGCATGGAAAGATATTAATGAAGGACTTCTTAGGCCCACT
CCCGTCTCTACAGAATTTTTAACTCCTATTCTCAATCTTGCTCGTATTGTTGAGGTTACA
TATATACACAATCTAGATGGATATACTCATCCGGAGAAAGTTTTGAAACCTCACATTATT
GCCCTGCTTGTGGACTCTATCGAAATTTGA

Peptide Sequence

PEP ID

XP_016503461.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: 5-epi-aristolochene synthase-like [Nicotiana tabacum]
Sequence

MASAAVANYEEDIVRPVADFXPSLWGDQFLSFSIDNQVAEKYIYAQEIEALKEQTRSMLL
ATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHG
FNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESA
APHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQM
LHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMIS
IVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGR
SHIVCHAIERMKEVVRNYNVESTWFIEGYMPPVSEYLSNALATTTYYYLATTSYLGMKSA
TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA
KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI
IALLVDSIEI

Transcript Sequence

Gene sequence data has not been registered.